Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D22
         (1691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    33   0.67 
01_01_0070 - 542603-542686,542803-543441                               31   3.6  

>01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,
            2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 33.1 bits (72), Expect = 0.67
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +2

Query: 905  SRTPRXXSRXXRXRXGGPRLXYXXRXSPPXXRTPRTXALIXPXXGXRXHSXHAAXXPPPS 1084
            SR+PR   R  R   G PR     R SP   R+PR  A   P    R  + +A+  P P 
Sbjct: 196  SRSPRGSPRDSRSPKGSPRDTQSPRGSPRDSRSPRRSA-SPPNGRNRSPTPNASRSPAPR 254

Query: 1085 RS 1090
             S
Sbjct: 255  DS 256


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 26/89 (29%), Positives = 30/89 (33%)
 Frame = +2

Query: 1052 SXHAAXXPPPSRSXPXAXAPTQPLXXVXXXVATPLTXXXNXLQAPXXSMLIARXXLXXXP 1231
            S  AA   P     P A A + P        ATP T      +AP  +  +A       P
Sbjct: 28   SPAAAPAQPTPTPVPTAPAKSPPAPATPAPTATP-TPPVAPAKAPPVAPAVA----PVTP 82

Query: 1232 PPPXXXDLSXGLXTPPHTXPXXXTXPXQS 1318
            PPP          TPP   P   T P  S
Sbjct: 83   PPPTPKKAPPPPVTPPPVTPPPVTPPPVS 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,892,104
Number of Sequences: 37544
Number of extensions: 316376
Number of successful extensions: 1240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5516297028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)