Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D22
         (1691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    31   1.8  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    31   2.4  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     31   2.4  

>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical protein
            Y48E1B.1 protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
 Frame = +1

Query: 1498 LPXXSTPTXXXXDAPLVXXT*QSRRPASXTXXSTPAXXXXAXT--PPXCRXPAHPXAXPX 1671
            +P  S PT    DAP          P        PA      T  PP    PA P   P 
Sbjct: 304  IPEASEPTEAEADAPTTFILPPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPP 363

Query: 1672 PPP 1680
            PPP
Sbjct: 364  PPP 366


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein 14
            protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 1559 DNLDGPPXAXXPPHPPMXPXRXPHQXVVPPR 1651
            D +DG P    PP PP  P   PH  + PP+
Sbjct: 170  DGVDGTPGEIGPPGPPAPPGPDPHS-LFPPQ 199


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 1559 DNLDGPPXAXXPPHPPMXPXRXPHQXVVPPR 1651
            D +DG P    PP PP  P   PH  + PP+
Sbjct: 151  DGVDGTPGEIGPPGPPAPPGPDPHS-LFPPQ 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,999,466
Number of Sequences: 27780
Number of extensions: 204165
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4961113244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)