Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D22
         (1691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18570.1 68417.m02749 proline-rich family protein common fami...    31   2.3  
At1g61080.1 68414.m06877 proline-rich family protein                   29   9.1  

>At4g18570.1 68417.m02749 proline-rich family protein common family
            members: At3g25690, At4g04980, At5g61090 [Arabidopsis
            thaliana]
          Length = 642

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 16/59 (27%), Positives = 20/59 (33%)
 Frame = +2

Query: 1511 PRXPXXRXTHRSCXXXDNLDGPPXAXXPPHPPMXPXRXPHQXVVPPRIXRRXXXPRXXP 1687
            P+ P  R         +  D PP    PP PP  P     Q   PP + +    P   P
Sbjct: 283  PKPPPKRSISLGDSTENRADPPPQKSIPPPPPPPPPPLLQQPPPPPSVSKAPPPPPPPP 341


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 24/102 (23%), Positives = 29/102 (28%)
 Frame = +2

Query: 986  PPXXRTPRTXALIXPXXGXRXHSXHAAXXPPPSRSXPXAXAPTQPLXXVXXXVATPLTXX 1165
            PP    P T A   P       +      PPP  +      P  P          P    
Sbjct: 511  PPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPM 570

Query: 1166 XNXLQAPXXSMLIARXXLXXXPPPPXXXDLSXGLXTPPHTXP 1291
             N   +P   M +        PPPP    L+ G   PP   P
Sbjct: 571  QNRAPSPPP-MPMGNSGSGGPPPPPPPMPLANGATPPPPPPP 611


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,143
Number of Sequences: 28952
Number of extensions: 193849
Number of successful extensions: 821
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4593407920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)