Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D21
         (872 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52260.1 68414.m05897 thioredoxin family protein similar to p...    29   3.1  
At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6) M...    28   9.4  

>At1g52260.1 68414.m05897 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 537

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 174 ASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYSFDANAKN 55
           AS N  TKL++  K+ +   Y +GE + P++ S   +AK+
Sbjct: 477 ASANEHTKLQVDDKYPIILLYKSGEKEKPLKLSTKLSAKD 516


>At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           glutathione-regulated potassium-efflux system protein
           KEFB, Escherichia coli, SWISSPROT:P45522
          Length = 597

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 425 HFYMYSITLCNSSIILVIIIKNTTVIAFIRVIKY 526
           HF    + +  +S+ILVIIIK T V   ++   Y
Sbjct: 462 HFLWTHVDILLASVILVIIIKTTIVTTVVKGFGY 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,859
Number of Sequences: 28952
Number of extensions: 210989
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)