Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_D20
(952 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.96
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 2.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.96
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 569 PPPPXGXGGXGGPPP 613
PPPP G G G PPP
Sbjct: 764 PPPPPGVAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 816 PXPXXXKKXXXXXPPPPPPPP 754
P P PPPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 817 PPPXXXKKXXXXXPPPPPPP 758
PPP PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 817 PPPXXXKKXXXXXPPPPPPP 758
PPP PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 816 PXPXXXKKXXXXXPPPPPPPP 754
P P PPPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 569 PPPPXGXGGXGGPPPXF 619
PPPP G G G PPP F
Sbjct: 129 PPPPAGFG-RGAPPPGF 144
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 817 PPPXXXKKXXXXXPPPPPPP 758
PPP PPPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 777 PPPPPPPP 754
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,297
Number of Sequences: 5004
Number of extensions: 23063
Number of successful extensions: 265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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