Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D20
         (952 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117407-1|AAI17408.1| 1081|Homo sapiens LOC152485 protein protein.    33   1.5  
AK091130-1|BAC03591.1| 1077|Homo sapiens protein ( Homo sapiens ...    33   1.5  
U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.                   31   8.1  
BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.        31   8.1  
AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing regula...    31   8.1  

>BC117407-1|AAI17408.1| 1081|Homo sapiens LOC152485 protein protein.
          Length = 1081

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 817 PPPXXXKKXXXXXPPPPPPP 758
           PPP   KK     PPPPPPP
Sbjct: 316 PPPPSEKKPEKVTPPPPPPP 335


>AK091130-1|BAC03591.1| 1077|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33811 fis, clone CTONG2002095. ).
          Length = 1077

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 817 PPPXXXKKXXXXXPPPPPPP 758
           PPP   KK     PPPPPPP
Sbjct: 316 PPPPSEKKPEKVTPPPPPPP 335


>U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.
          Length = 711

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 612 GGGPPXPPXPXGGGG 568
           GG PP PP P GGGG
Sbjct: 7   GGPPPGPPPPAGGGG 21


>BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.
          Length = 710

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 612 GGGPPXPPXPXGGGG 568
           GG PP PP P GGGG
Sbjct: 7   GGPPPGPPPPAGGGG 21


>AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing
           regulatory protein protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 612 GGGPPXPPXPXGGGG 568
           GG PP PP P GGGG
Sbjct: 7   GGPPPGPPPPAGGGG 21


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,635,070
Number of Sequences: 237096
Number of extensions: 2534166
Number of successful extensions: 43086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19584
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12547615372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)