Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D18
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.24 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.31 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    28   2.2  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 602 HNTKYNQYLKMSTTTCNCNSRXRVVYGGNSADSTRE 709
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 302 VNNLIIDKXRNTMEYCYKLWVGNGQEIVRKYFPLNFR--THHGRKLCQDHLQKLQPRSEA 475
           V+N I+D+  +  ++C ++W G   + +R ++   ++  +H   K    H+++     E 
Sbjct: 253 VHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRRAYNPFED 312

Query: 476 RFHNQSLE*EEL 511
           R      E EEL
Sbjct: 313 RCVWSKEEDEEL 324


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 602 HNTKYNQYLKMSTTTCNCNSRXRVVYGGNSA 694
           HN  +N + + S T+ +  SR  V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 662 RXRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 766
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,566
Number of Sequences: 5004
Number of extensions: 55449
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)