Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D18
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738     32   0.58 
06_01_0413 + 2946703-2947073,2947174-2947183                           29   4.1  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    28   9.4  
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178...    28   9.4  

>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
          Length = 707

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 322 VNDQVVNYISG*WSPCLGAQIPSADGQHWRRRR*GCCCTVAPRGL 188
           ++D   NY SG  S C G ++ SA  +   R   GCC    PRG+
Sbjct: 134 ISDPTSNYTSGCASSCPGGKVVSATNRTCSRI--GCCQITIPRGM 176


>06_01_0413 + 2946703-2947073,2947174-2947183
          Length = 126

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -2

Query: 234 GGAGEDAVVQLXLEGLVRSVRGECNDARAGGEP 136
           GGAG  A     L GL  +  GEC    AGGEP
Sbjct: 21  GGAGLAAAGTSDLCGLAETAFGECTAYVAGGEP 53


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 344 YCYKLWV-GNGQEIVRKYFPLNFRTHHGRKLCQ--DHLQKLQP 463
           Y ++LW  GN  E++ K+F  ++  H     CQ  D L   +P
Sbjct: 720 YAWRLWKDGNATELLDKFFVDSYPLHEAFSFCQSDDRLTPAKP 762


>04_04_0524 -
           25916869-25916876,25917352-25917506,25917712-25917841,
           25918013-25918094,25918180-25918213,25918271-25918327,
           25918686-25918791,25920755-25920881
          Length = 232

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 618 LYLVLWILKYTLLFSHQGNELPTDEFSMLV 529
           L L+ +IL+Y L F  + N LP D F+ LV
Sbjct: 47  LCLLWYILRYVLGFFQRYNLLPRDSFTFLV 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,734,790
Number of Sequences: 37544
Number of extensions: 427264
Number of successful extensions: 1235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)