Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D18
         (949 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303262-1|AAG50220.1|  362|Caenorhabditis elegans gap junction ...    30   2.1  
AF067219-9|AAX88822.1|  266|Caenorhabditis elegans Innexin prote...    30   2.1  
AF067219-8|AAC17025.1|  362|Caenorhabditis elegans Innexin prote...    30   2.1  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    29   6.4  
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF303262-1|AAG50220.1|  362|Caenorhabditis elegans gap junction
           innexin protein.
          Length = 362

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 420 MAGNYVKIIYRNYNLALKLGSTT-NPSNEKNCLRRWCRQAY*TRQLEVHYLGGRTTEC 590
           + G  + I+  N     K G T+ NP  EK      C++   +RQ++  + G R T C
Sbjct: 126 LIGINISIVTSNLRKVAKSGFTSENPDIEKKKKEMQCKKKATSRQVDGEFWGSRLTTC 183


>AF067219-9|AAX88822.1|  266|Caenorhabditis elegans Innexin protein
           17, isoform b protein.
          Length = 266

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 420 MAGNYVKIIYRNYNLALKLGSTT-NPSNEKNCLRRWCRQAY*TRQLEVHYLGGRTTEC 590
           + G  + I+  N     K G T+ NP  EK      C++   +RQ++  + G R T C
Sbjct: 126 LIGINISIVTSNLRKVAKSGFTSENPDIEKKKKEMQCKKKATSRQVDGEFWGSRLTTC 183


>AF067219-8|AAC17025.1|  362|Caenorhabditis elegans Innexin protein
           17, isoform a protein.
          Length = 362

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 420 MAGNYVKIIYRNYNLALKLGSTT-NPSNEKNCLRRWCRQAY*TRQLEVHYLGGRTTEC 590
           + G  + I+  N     K G T+ NP  EK      C++   +RQ++  + G R T C
Sbjct: 126 LIGINISIVTSNLRKVAKSGFTSENPDIEKKKKEMQCKKKATSRQVDGEFWGSRLTTC 183


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 432 YVKIIYRNYNLALKLGSTTNPSNEKNC 512
           ++K + +NY+  +K+  TT P NE NC
Sbjct: 293 HIKYLKKNYDKVVKI-ITTKPKNESNC 318


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 RKYFPLNFRTHHGRKLCQDH-LQKLQPRSEARFHNQSLE*EE 508
           +K  P NF +H G+ LC+ H L+   P        Q+ E +E
Sbjct: 224 KKLTPTNFNSHEGKLLCKVHMLEVFHPEIAHTMDPQNTEEDE 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,159
Number of Sequences: 27780
Number of extensions: 328277
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)