Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D18
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    27   0.33 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    26   0.57 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   9.3  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 597 LKYTLLFSHQGNELPTDEFSMLVYTIAVGNSSHSRDWLWNRASERGCS 454
           L Y+ L SH  N + T++F    Y     +     + LW +AS +G S
Sbjct: 263 LYYSALSSHNLNYVNTEQFVKSQYQANNVHYQGKENILWTQASAKGIS 310


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 449 QKLQPRSEARFHNQSLE*EELPTAMV*TSILNSSVGSSLPWWENNRVYFKIHNTKYNQYL 628
           +K + RS+ R  +++ E E      + +S+ N ++ ++  +  NN   +  +N  YN Y 
Sbjct: 57  RKYRERSKERSRDRT-ERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYK 115

Query: 629 KM 634
           K+
Sbjct: 116 KL 117


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 180 FSPSPRGATVQQHPHRRLR 236
           FSP     +V +HP+RR R
Sbjct: 378 FSPHEENESVDKHPNRRAR 396


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 492 PSNEKNCLRRWCRQAY*TRQLEV 560
           P +E+ C+ +W    Y   QLE+
Sbjct: 139 PFDEQRCVLKWASWTYDGYQLEL 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,602
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)