Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D17
         (905 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.47 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   4.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 210 GARVVPGAAREPRHRPAH 263
           G R  PG AR  RH PAH
Sbjct: 327 GGRRGPGPARSRRHLPAH 344


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 22/70 (31%), Positives = 28/70 (40%)
 Frame = +3

Query: 24   LYGNSLKNLAACPRADVLARAAPRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGRF 203
            LYG S     A  R       A  +GP   G  TRA   LA +    R+++R        
Sbjct: 2565 LYGQSFSLADAADRG----LNAKSYGPGEAGEFTRAGGFLAYYEICERVKKRGWTVTR-- 2618

Query: 204  DPGARVVPGA 233
            DP  R+ P A
Sbjct: 2619 DPQGRIGPYA 2628


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 308 CGISRPTTWRPCNTGTSD 361
           C   +PT WR C+  T +
Sbjct: 878 CENGKPTCWRECDKATCE 895


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 200  PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSGACQH 72
            P HC        A I+V++ + ++ S  A W+  +  +G  ++
Sbjct: 1191 PIHCQTEQDVPEAPIAVKALVMSTDSILASWKPPVEPNGIVEY 1233


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 421 DVQPSRSPRTPCRYLPPGTRVRCPSIARPPCGWSGYS 311
           D+   + P +P  Y PP    RCP I  P C +S  S
Sbjct: 16  DLCVRKRPHSPEPY-PP----RCPPIYEPSCQYSPVS 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,717
Number of Sequences: 336
Number of extensions: 2855
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)