Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D17
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        31   0.97 
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   5.2  
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_36165| Best HMM Match : YABBY (HMM E-Value=5.4)                     28   9.0  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   9.0  

>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 277 CRTDAGCEELVRNIQTN-HMEALQYWDIGPSFLVGGNGKVYEGSGWAARRRAHLRVQLEV 453
           C     C E     Q N  +  L  W +G +   GG+G  Y GSG    +RA +R  L +
Sbjct: 281 CTIGPLCIEDYMTCQGNTRLLMLLEWCVGQADY-GGHGNSYHGSGGRGNKRAQMRFVLRL 339

Query: 454 HRSRI 468
            RS +
Sbjct: 340 LRSMV 344


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 305  WCGISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGLHVG 424
            +C       W+PC  GT   ++   V  +C    AG + G
Sbjct: 1344 YCPAQTGLNWKPCPAGTYSNQTGLSVAGQCVDCDAGWYCG 1383


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/82 (24%), Positives = 32/82 (39%)
 Frame = -2

Query: 526 DRSAXQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPSRSPRTPCRYLPPGTRVRCPS 347
           +++  Q R  R  R E   + +       P+    +  PS +     +  P   R   P 
Sbjct: 260 EQAKEQRRMRRNSRKEEMMKVEEKNEVETPLSPVKEESPSTNKTFGYQTAPAAQRFGAPR 319

Query: 346 IARPPCGWSGYSAPAPRSQRPS 281
            A PP G   + +PAP+   PS
Sbjct: 320 -AEPPIGRGRFESPAPQQAPPS 340


>SB_36165| Best HMM Match : YABBY (HMM E-Value=5.4)
          Length = 374

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 538 QRSSDRSAXQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPSRSPRTPCRYLPP 371
           Q+SS  SA   RA  L  ++  DE + +G R+VP G   D+Q  +S        PP
Sbjct: 251 QKSSLLSAMLRRAD-LNSMQNIDEEEEEGQRLVPGGQGVDLQALKSAECEALGSPP 305


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 407 PEPSYTLPLPPTRNEGPMSQYC 342
           P P +  P PP  N GP  +YC
Sbjct: 214 PPPPFGAPPPPALNGGPPREYC 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,459,306
Number of Sequences: 59808
Number of extensions: 443921
Number of successful extensions: 1469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)