Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D15
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   3.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   5.0  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    26   6.6  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   8.7  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 626 SVGMVSVKKTYHTKDVIVRPKSEIEIHGY 712
           ++G++S  K +HT D+I+  ++    H Y
Sbjct: 402 NIGVISGIKQFHTGDIIINKENSKNFHEY 430


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 74  KSQNIFKVVLI*WCRNPVEAHKVVFEKCILQK*Y 175
           K QNIF  +   WC N +     VF  C+L + Y
Sbjct: 598 KLQNIFTTLYTAWCHNSI----AVFSLCLLSQNY 627


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 266 ANSLTHTFKLFKKVPSGSTAHNHLCK*WRQNTI 168
           +NSLTH    F  +   +T +  +CK W+ + I
Sbjct: 202 SNSLTHEKIEFATITKDTTKNKMVCKIWKSDEI 234


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 250 WVREFAIRSSALAQQSTYSKRLKD*STVLNPRKTNKIR*SVVVEQSEI 393
           ++R F  RSS  ++ S   K ++D       R+T +   + V+EQ ++
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKL 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,288
Number of Sequences: 5004
Number of extensions: 64071
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)