Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D15
         (932 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 869 SVXVYPTLAPTSSKFQTILPLFY*LLKIFMLY 774
           +V V P L   SS FQT+  +F  L  IF++Y
Sbjct: 425 TVSVIPELLENSSFFQTVKEIFAILTGIFLMY 456


>Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical
           protein AC3.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 762 YCCDNYFYCIFVLAAKQYPCISISLFGLTITSFV*YVFLTLTI-PTLSD 619
           Y  DN  YCI +     YP I+ SL  L++ +    V L  ++ P L D
Sbjct: 139 YLLDNVTYCIVIFLLNIYPVIAASLLYLSMLNKSEQVELVKSVYPNLVD 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,630
Number of Sequences: 27780
Number of extensions: 348849
Number of successful extensions: 804
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)