Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D15
         (932 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    29   4.4  
At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger) fa...    28   7.7  

>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 652 DISYKGCDCETKERDRDTRILLSCQDKNTV 741
           DI +KG D   KER R  R+LL   D + V
Sbjct: 272 DIEFKGLDHAVKERFRSKRVLLVVDDVDDV 301


>At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 419

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +1

Query: 619 ITKCWYG*C*KDISYKGCDCETKERDRDTR-----ILLSCQDKNTVEIVIATIVS 768
           I  CW     +D+     DCE +E D D       +L    D N+V + +A  +S
Sbjct: 213 IPLCWDSLQLEDLGINNEDCEWEEVDSDDEREVLSVLAEADDNNSVSVSVAATIS 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,099
Number of Sequences: 28952
Number of extensions: 311218
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)