Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D13
         (970 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    27   3.7  
09_06_0266 - 21936234-21936282,21936771-21937033                       27   4.6  
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    29   5.6  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    26   6.3  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    22   9.6  
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    28   9.7  
05_01_0225 - 1668176-1668190,1668557-1668570,1669139-1669277,166...    28   9.7  

>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 27.5 bits (58), Expect(2) = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 658 GGXXXXKKXKXXGGGXXPPPPPP 726
           GG    K+ +   G   PPPPPP
Sbjct: 348 GGAGHVKEDEAESGNMRPPPPPP 370



 Score = 20.6 bits (41), Expect(2) = 3.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 366 PPPPPPP 372


>09_06_0266 - 21936234-21936282,21936771-21937033
          Length = 103

 Score = 27.5 bits (58), Expect(2) = 4.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 694 GGGXXPPPPPP 726
           GGG  PPPPPP
Sbjct: 22  GGGRRPPPPPP 32



 Score = 20.6 bits (41), Expect(2) = 4.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 27  PPPPPPP 33


>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 725 GGGGGGXXPPPXXFXFFXXXXPPP 654
           GGGGGG   PP    FF    P P
Sbjct: 120 GGGGGGGTGPPMLSPFFRLPAPSP 143


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 26.2 bits (55), Expect(2) = 6.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 810 KKKKXXXXXXPPPPPXP 860
           KKKK      PPPPP P
Sbjct: 101 KKKKRHHHHHPPPPPPP 117



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 840 PPPPPXPXXXXK 875
           PPPPP P    K
Sbjct: 126 PPPPPPPPPPFK 137


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 22.2 bits (45), Expect(3) = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 709 PPPPPPXXK 735
           PPPPPP  K
Sbjct: 230 PPPPPPPPK 238



 Score = 21.8 bits (44), Expect(3) = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 694 GGGXXPPPPPP 726
           G    PPPPPP
Sbjct: 199 GPSTLPPPPPP 209



 Score = 20.6 bits (41), Expect(3) = 9.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 256 PPPGPPP 262


>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 658 GGXXXXKKXKXXGGGXXPPPPPP 726
           GG     K    GG   PPPPPP
Sbjct: 23  GGSPPAAKRTRCGGAFFPPPPPP 45


>05_01_0225 -
           1668176-1668190,1668557-1668570,1669139-1669277,
           1669398-1669520,1669710-1669940
          Length = 173

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 653 GGGGXXXKKXKKXXGGXXXPPXPPP 727
           GGGG    +     GG   PP PPP
Sbjct: 17  GGGGGAASEASGVAGGGSSPPHPPP 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,450,856
Number of Sequences: 37544
Number of extensions: 523862
Number of successful extensions: 8140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6052
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)