Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D13
         (970 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    23   4.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    23   4.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    23   4.8  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 655 GGGXXXXKKXKXXGGGXXPPPPPP 726
           GGG          GGG  PPPPPP
Sbjct: 93  GGGGGGCGGGGGCGGGCAPPPPPP 116


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 22.6 bits (46), Expect(3) = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 700 GXXPPPPPP 726
           G  PPPPPP
Sbjct: 740 GGPPPPPPP 748



 Score = 22.2 bits (45), Expect(3) = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 697 GGXXPPPPP 723
           GG  PPPPP
Sbjct: 724 GGPPPPPPP 732



 Score = 20.6 bits (41), Expect(3) = 4.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 758 PPPPPPP 764


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 22.6 bits (46), Expect(3) = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 700 GXXPPPPPP 726
           G  PPPPPP
Sbjct: 740 GGPPPPPPP 748



 Score = 22.2 bits (45), Expect(3) = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 697 GGXXPPPPP 723
           GG  PPPPP
Sbjct: 724 GGPPPPPPP 732



 Score = 20.6 bits (41), Expect(3) = 4.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 758 PPPPPPP 764


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 22.6 bits (46), Expect(3) = 4.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 700 GXXPPPPPP 726
           G  PPPPPP
Sbjct: 323 GGPPPPPPP 331



 Score = 22.2 bits (45), Expect(3) = 4.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 697 GGXXPPPPP 723
           GG  PPPPP
Sbjct: 307 GGPPPPPPP 315



 Score = 20.6 bits (41), Expect(3) = 4.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 342 PPPPPPP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,567
Number of Sequences: 27780
Number of extensions: 280557
Number of successful extensions: 2734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1947
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)