Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D13
         (970 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    27   2.5  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    27   3.0  
At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-conta...    29   4.6  
At3g57340.1 68416.m06382 DNAJ heat shock N-terminal domain-conta...    29   4.6  
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z...    28   8.1  

>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 26.6 bits (56), Expect(2) = 2.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 678 KXKXXGGGXXPPPXPPP 728
           K K  GG   PPP PPP
Sbjct: 319 KTKFAGGEFHPPPPPPP 335



 Score = 25.4 bits (53), Expect(2) = 9.0
 Identities = 14/51 (27%), Positives = 14/51 (27%)
 Frame = +3

Query: 708 PPPXPPPXKXXKKXFFXXXXXXXXXXXXXXXXXXKKKKXXXXXXPPPPPXP 860
           PPP PPP                           K K       PPPPP P
Sbjct: 285 PPPPPPPLPAFYNSSSRKDHPGIYRVERRESSVHKTKFAGGEFHPPPPPPP 335



 Score = 21.8 bits (44), Expect(2) = 2.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 708 PPPXPPPXKXXK 743
           PPP PPP +  K
Sbjct: 332 PPPPPPPVEYYK 343



 Score = 21.0 bits (42), Expect(2) = 9.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 840 PPPPPXPXXXXK 875
           PPPPP P    K
Sbjct: 332 PPPPPPPVEYYK 343


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 27.5 bits (58), Expect(2) = 3.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 694 GGGXXPPPPPP 726
           GGG  PPPPPP
Sbjct: 676 GGGPPPPPPPP 686



 Score = 20.6 bits (41), Expect(2) = 3.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 838 PPPXPPP 858
           PPP PPP
Sbjct: 698 PPPPPPP 704


>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 745 FXXFFXGGGXGGGXXPP 695
           F  FF GGG GGG  PP
Sbjct: 210 FRSFFGGGGFGGGGMPP 226


>At3g57340.1 68416.m06382 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 745 FXXFFXGGGXGGGXXPP 695
           F  FF GGG GGG  PP
Sbjct: 210 FRSFFGGGGFGGGGMPP 226


>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 309

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 722 GGGGGXXPPPXXFXFFXXXXPPP 654
           GGGGG  PPP          PPP
Sbjct: 149 GGGGGRRPPPPNMMLNPLMLPPP 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,491
Number of Sequences: 28952
Number of extensions: 278120
Number of successful extensions: 3217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2343832968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)