Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D12
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    29   5.9  
AF039720-9|AAK68360.2|  676|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical ...    29   5.9  

>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = +1

Query: 238 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWG 417
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG  D G
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGDGG 222


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 284 SPSSFCPKVPKTLPPPICLSQVTSRG-CR-LEDCPL 183
           SP  FC   P    PP C+S+V   G CR  ED P+
Sbjct: 321 SPYLFCYIPPNNEHPPSCVSKVRRNGVCRGFEDYPI 356


>AF039720-9|AAK68360.2|  676|Caenorhabditis elegans Hypothetical
           protein F33D11.9b protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 310 LCCNQLFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRIAR*SSNLPRNQKVRKLL 140
           L    LF  V+       +   +P  V PK    G+A+++ R  S+LP+++  ++L+
Sbjct: 53  LSAQWLFDPVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELI 109


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 677 PILNN*KKLIYLAKDYXLSVEVITNHGGSLLEDRRLVFCDRTPSRPYHRQKSGCSYPD 504
           PI  N + L  +       +EVIT   G + ED++L+   +T  + Y R  +   + D
Sbjct: 425 PIRRNGENLRKIVSSAPTVLEVITKISGDVAEDKQLISRIKTSEKFYGRPSTSVDWND 482


>AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical
           protein Y58A7A.3 protein.
          Length = 883

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 677 PILNN*KKLIYLAKDYXLSVEVITNHGGSLLEDRRLVFCDRTPSRPYHRQKSGCSYPD 504
           PI  N + L  +       +EVIT   G + ED++L+   +T  + Y R  +   + D
Sbjct: 406 PIRRNGENLRKIVSSAPTVLEVITKISGDVAEDKQLISRIKTSEKFYGRPSTSVDWND 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,265
Number of Sequences: 27780
Number of extensions: 378131
Number of successful extensions: 1033
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)