Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D11
         (895 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113525-1|AAM29530.1|   79|Drosophila melanogaster RE60462p pro...    84   3e-16
AE014298-991|AAF46232.3|   79|Drosophila melanogaster CG32736-PB...    84   3e-16
AE014298-990|AAF46233.2|   79|Drosophila melanogaster CG32736-PA...    84   3e-16

>AY113525-1|AAM29530.1|   79|Drosophila melanogaster RE60462p
           protein.
          Length = 79

 Score = 83.8 bits (198), Expect = 3e-16
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = +1

Query: 133 KNLLINGLEKGLLGIYRFLPIFFLLGASLEFSMINWKVGEVNFYNTFKKRQARDLIEEK 309
           + LL +   K   G+YRFLP+FFLLGA LEFSMINW VGE NFY TFK+RQA++ +EE+
Sbjct: 9   RRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTVGETNFYRTFKRRQAKNYVEEQ 67



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 129 IQKLVNKWPGKRAFGNL*VSPYFFL 203
           +++L++ WPGK+ FG     P FFL
Sbjct: 8   VRRLLDSWPGKKRFGVYRFLPLFFL 32


>AE014298-991|AAF46232.3|   79|Drosophila melanogaster CG32736-PB,
           isoform B protein.
          Length = 79

 Score = 83.8 bits (198), Expect = 3e-16
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = +1

Query: 133 KNLLINGLEKGLLGIYRFLPIFFLLGASLEFSMINWKVGEVNFYNTFKKRQARDLIEEK 309
           + LL +   K   G+YRFLP+FFLLGA LEFSMINW VGE NFY TFK+RQA++ +EE+
Sbjct: 9   RRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTVGETNFYRTFKRRQAKNYVEEQ 67



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 129 IQKLVNKWPGKRAFGNL*VSPYFFL 203
           +++L++ WPGK+ FG     P FFL
Sbjct: 8   VRRLLDSWPGKKRFGVYRFLPLFFL 32


>AE014298-990|AAF46233.2|   79|Drosophila melanogaster CG32736-PA,
           isoform A protein.
          Length = 79

 Score = 83.8 bits (198), Expect = 3e-16
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = +1

Query: 133 KNLLINGLEKGLLGIYRFLPIFFLLGASLEFSMINWKVGEVNFYNTFKKRQARDLIEEK 309
           + LL +   K   G+YRFLP+FFLLGA LEFSMINW VGE NFY TFK+RQA++ +EE+
Sbjct: 9   RRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTVGETNFYRTFKRRQAKNYVEEQ 67



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 129 IQKLVNKWPGKRAFGNL*VSPYFFL 203
           +++L++ WPGK+ FG     P FFL
Sbjct: 8   VRRLLDSWPGKKRFGVYRFLPLFFL 32


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,993,310
Number of Sequences: 53049
Number of extensions: 447405
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)