Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D06
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    26   6.5  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   8.6  

>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 475 SCRLWRSMLFCRNIQNLWHNRTA*TARWLLP-SFFRKRFENSKFLGKESDLVHHS 314
           SC+   + L C ++Q  W+N+ A     L P   + K  E S+ +  E + + +S
Sbjct: 195 SCKWHAASLVCEDLQPEWYNKLAYWQEELAPLHAYTKNLEESRKILVEKEALLNS 249


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 635 LERENML*LRNYQRKRTIRNVRQLFQF 715
           LE+EN+L L + QRKR  +   Q  QF
Sbjct: 266 LEKENLLLLMDDQRKRDFQPTFQRLQF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,391
Number of Sequences: 5004
Number of extensions: 58064
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)