Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D06
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    29   6.2  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 697 YITNCSFSLIIP*L*HIFSFKATIHHLNVVHFIFNFHVDKILRIS-FVWSQVERSWR 530
           Y++  +F +I+  L  IFSF AT +   ++ FIFN     +     F + Q+  SW+
Sbjct: 214 YVSILTFFIIVCILSVIFSFSATPNVQRLLKFIFNLSYTLLTIFGPFFFLQMSDSWQ 270


>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 743 EXAYLTEDVGLNAYYYYFHSHLPFWVELWVKYGAFKERRG 862
           E  Y   D   + Y  + H H    V+ W+KY  F+ER G
Sbjct: 197 ELRYKEIDRARSVYQRFLHVH-GINVQNWIKYAKFEERNG 235


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 400 LFKLFYYAKDFECFYKTACYARVYMNQGMFLYAYYIAIIQRSDTASFVLPGSIRSL 567
           L + +YY  +F    +T C   +Y +      ++ +A+I R+D    V+   +R+L
Sbjct: 367 LMEKYYYQAEFNSLVQTHCNDLIY-DPAKITQSHVLAVINRNDLPQPVVEVIVRNL 421


>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
 Frame = +2

Query: 545 YLAPYE---AYPQYFVNMEVKNKMDYVK-MMDGCLERENML*LRNYQRKRTIRNVRQLFQ 712
           Y+  YE   A+PQ+    + K +  +VK + D  L+ ++ L     +   +++ V  + Q
Sbjct: 207 YMIIYELTKAFPQFLFTCDEKQQNLHVKNISDDYLKEKDNLERARARCSESVKGVSAILQ 266

Query: 713 FPXLTPTTKTEXAYLTEDVGLNAYYYYFHSHLP 811
              +T         L + + +   Y+YF SHLP
Sbjct: 267 VVHMTGKLVVGHNSLLDAMYM---YHYFFSHLP 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,117
Number of Sequences: 27780
Number of extensions: 318256
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)