Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D04
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   168   1e-42
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    32   0.13 
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   4.9  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  168 bits (408), Expect = 1e-42
 Identities = 107/226 (47%), Positives = 129/226 (57%), Gaps = 2/226 (0%)
 Frame = +1

Query: 238 KPTDATTNPSLILSAAGYGNSISTFLDKAIKYGKDKWEAH*KKQVG*XFGIC*VVLFGL* 417
           KP DATTNPSLIL AA      +  +D A+ Y K K  +    Q+   F    ++ FG  
Sbjct: 28  KPQDATTNPSLIL-AASKKPQYAALVDAAVDYAKAKGGSI-NSQIEIAFDRL-LIEFGT- 83

Query: 418 NY*XLFLGRVSVES*CRLSFDKDASIAKAXNLS--FIC*TWY*KEXFXKLASTWEGFKQP 591
               +  GRVS E   R SFD   +I KA +L   +       +    K+AST+EG +  
Sbjct: 84  KILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYEAEGIGRERVLIKIASTYEGIQAA 143

Query: 592 RVGEEAWNHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGQEDPGVV 771
           +  EE   HCNLTLLFS  QA+ACAEANVTLISPFVGRILD+Y     + Y  QEDPGVV
Sbjct: 144 KQLEEEGIHCNLTLLFSFVQAVACAEANVTLISPFVGRILDFYKAKNNRDYTAQEDPGVV 203

Query: 772 SVTXXXXXXXXXXXXTXVMGASFRNTGEIRELXGCDLLTXSPKLLQ 909
           SV+            T VMGASFRN GEI+EL G D LT SP LL+
Sbjct: 204 SVSNIFNYYKKFGYKTIVMGASFRNVGEIKELAGVDFLTISPALLE 249


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -3

Query: 329 LIALSKNVLILFPYPAAESIKLGFVVASVGFIFFHGLKFSKYLPQPSGMLV*SLILRH 156
           LI++  + +ILF YP    + LGF  AS GF  F      K +  P  +L  S++L H
Sbjct: 325 LISILPSCVILFLYPRKRLLALGFASASWGFFLFSFQVHEKSVLLP--LLPTSILLCH 380


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 687 Y*CNICFSTGNSLVQR--EQQCKITMIPC 607
           Y CN  F+  NSLV R  +Q C +T   C
Sbjct: 500 YFCNDIFAPSNSLVDRTLDQTCTVTRSGC 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,664,319
Number of Sequences: 5004
Number of extensions: 76642
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)