Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D04
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   170   1e-42
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...   115   5e-26
AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical ...    43   3e-04
AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    31   0.86 
U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    30   2.6  
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    30   2.6  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  170 bits (413), Expect = 1e-42
 Identities = 108/235 (45%), Positives = 136/235 (57%), Gaps = 8/235 (3%)
 Frame = +1

Query: 229 KNIKPTDATTNPSLILSAAGYGNSISTFLDKAIKYGKDKWEAH*KKQVG*XFGIC*VVLF 408
           K  +PTDATTNPSLIL+A+      +  +D+++ Y K+    H +        +   V+F
Sbjct: 24  KEFQPTDATTNPSLILAASKM-EQYAALIDQSVAYAKEHASGHQEVLQAAMDRL--FVVF 80

Query: 409 GL*NY*XLFLGRVSVES*CRLSFDKDASIAKAXNLSFIC*TWY*KEXFXK------LAST 570
           G         GRVS E   RLSFD  ASI +A  L       Y KE   K      LAST
Sbjct: 81  GK-EILKTIPGRVSTEVDARLSFDTQASIDRALGLI----AQYEKEGISKDRILIKLAST 135

Query: 571 WEGFKQPRVGEEAWN-HCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTY 744
           WEG +  +  E     HCN+TLLF+  QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y
Sbjct: 136 WEGIRAAKFLESKHGIHCNMTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAY 195

Query: 745 EGQEDPGVVSVTXXXXXXXXXXXXTXVMGASFRNTGEIRELXGCDLLTXSPKLLQ 909
             ++DPGVVSVT            T VM ASFRNT EI+ L GCDLLT SP LL+
Sbjct: 196 TRKDDPGVVSVTRIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLK 250


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score =  115 bits (276), Expect = 5e-26
 Identities = 57/96 (59%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
 Frame = +1

Query: 625 LTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGQEDPGVVSVTXXXXXXX 801
           +TLLF+  QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y  ++DPGVVSVT       
Sbjct: 1   MTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYK 60

Query: 802 XXXXXTXVMGASFRNTGEIRELXGCDLLTXSPKLLQ 909
                T VM ASFRNT EI+ L GCDLLT SP LL+
Sbjct: 61  KYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLK 96


>AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical
           protein Y73B3A.2 protein.
          Length = 97

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +1

Query: 826 MGASFRNTGEIRELXGCDLLTXSPKLLQ 909
           M ASFRNT EI+ L GCDLLT SP LL+
Sbjct: 1   MAASFRNTEEIKGLVGCDLLTISPALLK 28


>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = -3

Query: 371 TCFFQ*ASHLSFPYLIALSKNVLILFPYPAAESIKLGFVVASVGFIFFHGLKFSKYLPQP 192
           T +F  A+ ++FP+L+AL +  LI+FP   A+ +  G +  ++  IF +   F+ +L   
Sbjct: 116 TYYFNYAT-MAFPFLVALLRLNLIIFPSTHAK-VNKGILKIAIPLIFTYPFIFTFFLFPG 173

Query: 191 SG 186
           SG
Sbjct: 174 SG 175


>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +2

Query: 248 MLLQIQA*YSLLLGMETVSAHSWIKLLNMERINGKL 355
           +L+ I A Y+L++G+  V+ ++ I+ +  E +NGK+
Sbjct: 288 ILMTIMATYNLVIGIVAVNLYNKIQTIKSEELNGKV 323


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +2

Query: 248 MLLQIQA*YSLLLGMETVSAHSWIKLLNMERINGKL 355
           +L+ I A Y+L++G+  V+ ++ I+ +  E +NGK+
Sbjct: 288 ILMTIMATYNLVIGIVAVNLYNKIQTIKSEELNGKV 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,056,377
Number of Sequences: 27780
Number of extensions: 417716
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)