Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_D03
(879 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15; ... 113 7e-24
UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative; ... 89 1e-16
UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;... 86 1e-15
UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1; ... 80 6e-14
UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma j... 76 1e-12
UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1; A... 71 3e-11
UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14; ... 64 3e-09
UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3; Eimer... 64 4e-09
UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1; ... 63 8e-09
UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;... 62 2e-08
UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putati... 60 6e-08
UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, wh... 57 5e-07
UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative; ... 54 4e-06
UniRef50_Q7R992 Cluster: Acidic ribosomal protein P1-hydromedusa... 52 1e-05
UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11... 52 1e-05
UniRef50_Q7R476 Cluster: GLP_480_102976_103332; n=1; Giardia lam... 51 3e-05
UniRef50_A2G448 Cluster: 60s Acidic ribosomal protein; n=2; Tric... 50 1e-04
UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;... 49 2e-04
UniRef50_Q7XBP6 Cluster: Ubiquitin/ribosomal protein P1 fusion; ... 48 3e-04
UniRef50_Q9N6F4 Cluster: 60S acidic ribosomal protein P2, putati... 46 0.002
UniRef50_P10622 Cluster: 60S acidic ribosomal protein P1-beta; n... 46 0.002
UniRef50_P26643 Cluster: 60S acidic ribosomal protein P1; n=4; E... 45 0.002
UniRef50_O46313 Cluster: 60S acidic ribosomal protein P1; n=4; L... 45 0.002
UniRef50_A2DFD3 Cluster: 60S acidic ribosomal protein P1, putati... 41 0.048
UniRef50_Q4QFE2 Cluster: 60S acidic ribosomal protein, putative;... 39 0.15
UniRef50_O28780 Cluster: 50S ribosomal protein L12P; n=26; Archa... 38 0.44
UniRef50_Q22XR4 Cluster: 60s Acidic ribosomal protein; n=1; Tetr... 37 0.78
UniRef50_P15772 Cluster: 50S ribosomal protein L12P; n=10; Archa... 35 2.4
UniRef50_O57705 Cluster: 50S ribosomal protein L12P; n=5; Archae... 35 3.1
UniRef50_Q7MT74 Cluster: ThiH protein; n=1; Porphyromonas gingiv... 34 4.1
UniRef50_Q8R9Q0 Cluster: Predicted permease; n=3; Thermoanaeroba... 33 7.2
UniRef50_Q98SB2 Cluster: Acidic ribosomal protein P1; n=1; Guill... 33 7.2
UniRef50_UPI0000608022 Cluster: PREDICTED: similar to 60S acidic... 33 9.6
>UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15;
Eukaryota|Rep: 60S acidic ribosomal protein P1 -
Drosophila melanogaster (Fruit fly)
Length = 112
Score = 113 bits (271), Expect = 7e-24
Identities = 56/73 (76%), Positives = 64/73 (87%)
Frame = +2
Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 317 TKHRLWSGCCSGP 355
T + SG + P
Sbjct: 61 T--NIGSGVGAAP 71
>UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative;
n=2; Aedes aegypti|Rep: Acidic ribosomal protein P1,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 106
Score = 89.0 bits (211), Expect = 1e-16
Identities = 46/65 (70%), Positives = 53/65 (81%)
Frame = +2
Query: 125 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 304
S++K+ + A +C YSALIL DDDVAVT EKISTI A VD+EPYWPGLF KALEGINV
Sbjct: 9 SQVKITAIA--SCAYSALILFDDDVAVTDEKISTI--QANVDIEPYWPGLFTKALEGINV 64
Query: 305 RDLIT 319
+DLIT
Sbjct: 65 KDLIT 69
>UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;
Eukaryota|Rep: 60S acidic ribosomal protein P1 - Homo
sapiens (Human)
Length = 114
Score = 85.8 bits (203), Expect = 1e-15
Identities = 38/60 (63%), Positives = 49/60 (81%)
Frame = +2
Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
>UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 88
Score = 80.2 bits (189), Expect = 6e-14
Identities = 44/52 (84%), Positives = 46/52 (88%)
Frame = +2
Query: 164 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 319
VYSALILVDD VAVT EKISTILKAA +VEPYW LFAKALEGINV+DLIT
Sbjct: 36 VYSALILVDD-VAVTDEKISTILKAA--NVEPYWRALFAKALEGINVKDLIT 84
>UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09468 protein - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 75.8 bits (178), Expect = 1e-12
Identities = 37/60 (61%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Frame = +2
Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD-VEPYWPGLFAKALEGINVRDLI 316
+SK+ELACVY+AL+L DDD+ VT +KI+TILKAA + VE Y P LFA +L G NV+DL+
Sbjct: 1 MSKSELACVYAALMLADDDIDVTADKINTILKAANIKFVESYLPNLFATSLNGKNVKDLL 60
>UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1;
Arabidopsis thaliana|Rep: 60s acidic ribosomal protein
P1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 111
Score = 71.3 bits (167), Expect = 3e-11
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = +2
Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLI 59
>UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14;
Dikarya|Rep: 60S acidic ribosomal protein P1 -
Cladosporium herbarum (Davidiella tassiana)
Length = 110
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +2
Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAV-DVEPYWPGLFAKALEGINVRDLI 316
+S AELA Y+ALIL D+ + +T +K+ ++ AA V ++EP W LFAKALEG +V+DL+
Sbjct: 1 MSAAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLL 60
>UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3;
Eimeriorina|Rep: Acidic ribosomal protein P1 -
Cryptosporidium hominis
Length = 124
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = +2
Query: 116 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEG 295
++ ++L EL C Y+AL+L D V VT E I I+ AA VEPY+PGLFA+AL
Sbjct: 4 VSMNELPQSQVQELICSYAALVLSDGGVPVTSENIKKIISAAGGSVEPYFPGLFAQALST 63
Query: 296 INVRDLI 316
NV D++
Sbjct: 64 TNVSDIV 70
>UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 114
Score = 63.3 bits (147), Expect = 8e-09
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAV-DVEPYWPGLFAKALEGINVRDL 313
M + E A Y+ALIL DD +T EK+ +L AA + DVEP W LFAKALEG +V+D+
Sbjct: 1 MPTDPERAVSYAALILADDATPITPEKLQVLLIAAGIEDVEPIWTTLFAKALEGKDVKDI 60
Query: 314 ITK 322
+T+
Sbjct: 61 LTE 63
>UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 103
Score = 61.7 bits (143), Expect = 2e-08
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 152 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGI 298
+ C+YSA IL +D V V +KI+T +KAA ++VEP+WPGLFAK+L +
Sbjct: 19 KFTCIYSAHILHNDKVMVMEDKINTPIKAAGINVEPFWPGLFAKSLNNV 67
>UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putative;
n=2; Theileria|Rep: 60S acidic ribosomal protein P1,
putative - Theileria parva
Length = 117
Score = 60.5 bits (140), Expect = 6e-08
Identities = 31/77 (40%), Positives = 50/77 (64%)
Frame = +2
Query: 125 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 304
S+L + EL CVYS+L+L DD + VT + I ++KAA D++P+ P LFA+AL+G ++
Sbjct: 7 SELTKEQREELMCVYSSLVLYDDGLDVTQDNILKLVKAAKGDMQPFTPMLFARALKGKDL 66
Query: 305 RDLITKHRLWSGCCSGP 355
L++ + SG + P
Sbjct: 67 GSLLS--AVGSGAAAAP 81
>UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=8; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_44,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 57.2 bits (132), Expect = 5e-07
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 149 AELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
+E AC Y+ALIL +D+ + K++ I+KAA + VEP W +F KAL+G V DL+
Sbjct: 17 SEAACTYAALILYEDNQEINAAKLAQIIKAANLRVEPIWTKVFEKALKGKKVGDLL 72
>UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative;
n=1; Aedes aegypti|Rep: Acidic ribosomal protein P1,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 88
Score = 54.4 bits (125), Expect = 4e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +2
Query: 239 AAVDVEPYWPGLFAKALEGINVRDLIT 319
A VD+EPYWP LFAKALEGINV+DLIT
Sbjct: 6 ANVDIEPYWPALFAKALEGINVKDLIT 32
>UniRef50_Q7R992 Cluster: Acidic ribosomal protein P1-hydromedusa;
n=5; Plasmodium|Rep: Acidic ribosomal protein
P1-hydromedusa - Plasmodium yoelii yoelii
Length = 119
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +2
Query: 125 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 304
++L K EL C Y+ALIL ++ +++T E I ++K + V PY P LF KAL+G ++
Sbjct: 7 AELPECEKQELLCTYAALILHEEKMSITNENIVKLIKKSNNTVLPYLPMLFEKALKGKDI 66
Query: 305 RDLITKHRLWSG 340
L++ + G
Sbjct: 67 EGLLSNLSVGGG 78
>UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P1-A -
Candida albicans (Yeast)
Length = 106
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +2
Query: 152 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRD 310
E A Y+ALIL D +V +T EK+ ++ A V+VE W LFAKALEG ++++
Sbjct: 4 ESALSYAALILADAEVEITSEKLLALVTKANVEVEGIWADLFAKALEGKDLKE 56
>UniRef50_Q7R476 Cluster: GLP_480_102976_103332; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_480_102976_103332 - Giardia
lamblia ATCC 50803
Length = 118
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +2
Query: 152 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 319
E ACV +A+IL D++ T + +I AA V V+ W LFA LEG NV++L+T
Sbjct: 5 ETACVLAAIILADENQEPTAANLKSICDAAGVKVDSIWFTLFANYLEGKNVKELLT 60
>UniRef50_A2G448 Cluster: 60s Acidic ribosomal protein; n=2;
Trichomonas vaginalis G3|Rep: 60s Acidic ribosomal
protein - Trichomonas vaginalis G3
Length = 104
Score = 49.6 bits (113), Expect = 1e-04
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +2
Query: 149 AELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
AELACVY+ALIL D + + + ++ ++ A+ + ++ +W L+A + NV DLI
Sbjct: 3 AELACVYAALILNDGEKEINADSLAKVVAASGLKLDQFWVNLYADYFKKANVADLI 58
>UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P1 - Entamoeba histolytica HM-1:IMSS
Length = 106
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +2
Query: 152 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
ELA +AL++ + +T E I+T+L A + VE +WP + AKAL N+ DLI
Sbjct: 9 ELAVALAALLIHEAGKEITAEHINTVLHHANIKVEGFWPIIMAKALTNANIEDLI 63
>UniRef50_Q7XBP6 Cluster: Ubiquitin/ribosomal protein P1 fusion;
n=3; Chlorarachniophyceae|Rep: Ubiquitin/ribosomal
protein P1 fusion - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 221
Score = 48.0 bits (109), Expect = 3e-04
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +2
Query: 146 KAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEG 295
K ELA +Y +IL + +T E I+ +L A+ ++V PYWP +FA+ ++G
Sbjct: 119 KQELAIMYCGMILNEVKADITEENINKLLSASKIEVAPYWPKMFAEIVKG 168
>UniRef50_Q9N6F4 Cluster: 60S acidic ribosomal protein P2, putative;
n=7; Trypanosomatidae|Rep: 60S acidic ribosomal protein
P2, putative - Leishmania major
Length = 111
Score = 45.6 bits (103), Expect = 0.002
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
+S LAC Y+AL+L D + + E I+ +KAA V++ P P +FA+ LE +V L+
Sbjct: 1 MSAETLACTYAALMLSDAGLPTSAENIAAAVKAAGVEMRPTLPIIFARFLEKKSVETLM 59
>UniRef50_P10622 Cluster: 60S acidic ribosomal protein P1-beta;
n=21; Ascomycota|Rep: 60S acidic ribosomal protein
P1-beta - Saccharomyces cerevisiae (Baker's yeast)
Length = 106
Score = 45.6 bits (103), Expect = 0.002
Identities = 18/51 (35%), Positives = 35/51 (68%)
Frame = +2
Query: 167 YSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 319
++A IL D + +T + + TI KAA +V+ W ++AKALEG +++++++
Sbjct: 8 FAAFILADAGLEITSDNLLTITKAAGANVDNVWADVYAKALEGKDLKEILS 58
>UniRef50_P26643 Cluster: 60S acidic ribosomal protein P1; n=4;
Eukaryota|Rep: 60S acidic ribosomal protein P1 -
Trypanosoma cruzi
Length = 109
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +2
Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
M SK +LAC Y+ALIL D + + + KAA VDV FA L+ +++ D++
Sbjct: 1 MSSKQQLACTYAALILADSG-KTDMDSLLKVTKAAGVDVSKGMASAFASILKNVDINDVL 59
Query: 317 TK 322
+K
Sbjct: 60 SK 61
>UniRef50_O46313 Cluster: 60S acidic ribosomal protein P1; n=4;
Leishmania|Rep: 60S acidic ribosomal protein P1 -
Leishmania peruviana
Length = 107
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 155 LACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
LAC Y+AL+L D + + E I+ +KAA V V P P +FA+ LE +V L+
Sbjct: 6 LACTYAALMLSDAGLPTSAENIAAAVKAAGVSVRPTMPIIFARFLEKKSVEALM 59
>UniRef50_A2DFD3 Cluster: 60S acidic ribosomal protein P1, putative;
n=1; Trichomonas vaginalis G3|Rep: 60S acidic ribosomal
protein P1, putative - Trichomonas vaginalis G3
Length = 44
Score = 40.7 bits (91), Expect = 0.048
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 152 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYW 265
ELACVY+ALIL D D +T + + I+ A+ + + +W
Sbjct: 4 ELACVYAALILHDGDKEITADALQKIIDASGLQTDKFW 41
>UniRef50_Q4QFE2 Cluster: 60S acidic ribosomal protein, putative;
n=8; Eukaryota|Rep: 60S acidic ribosomal protein,
putative - Leishmania major
Length = 108
Score = 39.1 bits (87), Expect = 0.15
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +2
Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
++ A+LAC Y+ALIL + I + KAA V+V FA AL +NV +++
Sbjct: 1 MTTAQLACTYAALILSASG-KTDADSICAVTKAAGVEVSHGMAAAFANALAAVNVNEVL 58
>UniRef50_O28780 Cluster: 50S ribosomal protein L12P; n=26;
Archaea|Rep: 50S ribosomal protein L12P - Archaeoglobus
fulgidus
Length = 106
Score = 37.5 bits (83), Expect = 0.44
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 164 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITKHRLWSGC 343
VY+AL+L +T + + +L+AA V+V+ ALEG+N+ + I K +
Sbjct: 4 VYAALLLHSAGKEITEDNVKAVLEAAGVEVDEARVKALVAALEGVNIDEAIQKAAMPMAV 63
Query: 344 CSGP 355
+ P
Sbjct: 64 AAAP 67
>UniRef50_Q22XR4 Cluster: 60s Acidic ribosomal protein; n=1;
Tetrahymena thermophila SB210|Rep: 60s Acidic ribosomal
protein - Tetrahymena thermophila SB210
Length = 271
Score = 36.7 bits (81), Expect = 0.78
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 158 ACVYSALILVDDDVAVTGEKISTIL-KAAAVDVEPYWPGLF 277
AC Y+ L+L DD A+T + I+ +L KA +VE Y P L+
Sbjct: 8 ACTYAVLLLSDDGQAITVDNINKVLTKAKVQNVEKYLPKLY 48
>UniRef50_P15772 Cluster: 50S ribosomal protein L12P; n=10;
Archaea|Rep: 50S ribosomal protein L12P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 115
Score = 35.1 bits (77), Expect = 2.4
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 164 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
VY+ALIL + D + + ++ +L AA VDVE ALE +++ + +
Sbjct: 4 VYAALILNEADEEINEDNLTDVLDAAGVDVEESRVKALVAALEDVDIEEAV 54
>UniRef50_O57705 Cluster: 50S ribosomal protein L12P; n=5;
Archaea|Rep: 50S ribosomal protein L12P - Pyrococcus
horikoshii
Length = 108
Score = 34.7 bits (76), Expect = 3.1
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 164 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITK 322
VY+AL+L + E + +L+AA V+ E ALEG+N+ ++I K
Sbjct: 4 VYAALLLHSVGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56
>UniRef50_Q7MT74 Cluster: ThiH protein; n=1; Porphyromonas
gingivalis|Rep: ThiH protein - Porphyromonas gingivalis
(Bacteroides gingivalis)
Length = 370
Score = 34.3 bits (75), Expect = 4.1
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Frame = -2
Query: 281 WRTDLANMALHLQPPLSRWW--KFSHQLRQHHHPPG*EQSKHM-----LIQLLTPFLVLN 123
WR D ALHL+ +W KFS L + G + K ++QL+T F +L+
Sbjct: 232 WRVDSVFTALHLRYLEQTYWKSKFSISLPRLRPATGGWEPKDPIDDVGMVQLITAFRLLD 291
Query: 122 VQVAVALSSRENK 84
V ++LS+RE++
Sbjct: 292 KDVEISLSTRESR 304
>UniRef50_Q8R9Q0 Cluster: Predicted permease; n=3;
Thermoanaerobacter|Rep: Predicted permease -
Thermoanaerobacter tengcongensis
Length = 251
Score = 33.5 bits (73), Expect = 7.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 170 SKHMLIQLLTPFLVLNVQVAVALSSRENKHV*VSDKQRETKSL 42
+ H + + PFLV+ V +AL+ R NK + D+ + KSL
Sbjct: 93 TSHKVFDFIMPFLVMFATVVLALNERINKFNLIDDRNNKNKSL 135
>UniRef50_Q98SB2 Cluster: Acidic ribosomal protein P1; n=1;
Guillardia theta|Rep: Acidic ribosomal protein P1 -
Guillardia theta (Cryptomonas phi)
Length = 104
Score = 33.5 bits (73), Expect = 7.2
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 155 LACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRD 310
++C+ S LIL ++ + +T + IS +LK + +VE Y+ F + ++ ++
Sbjct: 10 ISCILSILILKENKIKITKDLISLVLKTSNNNVEDYFLSYFERISASLDEKE 61
>UniRef50_UPI0000608022 Cluster: PREDICTED: similar to 60S acidic
ribosomal protein P1 isoform 4; n=3;
Euarchontoglires|Rep: PREDICTED: similar to 60S acidic
ribosomal protein P1 isoform 4 - Mus musculus
Length = 88
Score = 33.1 bits (72), Expect = 9.6
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 137 MVSKAELACVYSALILVDDD 196
M S +ELAC+YSALIL +DD
Sbjct: 1 MASASELACIYSALILHEDD 20
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,734,288
Number of Sequences: 1657284
Number of extensions: 8305464
Number of successful extensions: 22094
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 21586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22079
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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