Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D03
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   105   4e-23
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   101   5e-22
Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  105 bits (252), Expect = 4e-23
 Identities = 56/108 (51%), Positives = 67/108 (62%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 317 TKHRLWSGCCSGPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMG 460
           T   + SG  SGP                             SDDDMG
Sbjct: 61  TS--VSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMG 106


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  101 bits (243), Expect = 5e-22
 Identities = 55/108 (50%), Positives = 66/108 (61%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 317 TKHRLWSGCCSGPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMG 460
           T   + SG  SGP                             SDDDMG
Sbjct: 61  TS--VSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMG 106


>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical
           protein F54D1.6 protein.
          Length = 1423

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 55  SLCLSETQTCLFSLELRATATCTFKT 132
           ++CL ++QT +  +E R TATCT  T
Sbjct: 382 AICLDKSQTYILMIEQRQTATCTVLT 407


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 125 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 262
           S  KM+ K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 34  SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,208
Number of Sequences: 27780
Number of extensions: 197409
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)