Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D02
         (878 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   1.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 601 CWRXP*APPPXTSIQKSPPPQRWXN 675
           CW    +PPP   I   P P +  N
Sbjct: 323 CWSLTSSPPPPYQISAQPTPSQSPN 347


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 619 APPPXTSIQKSPPPQRWXNPTG 684
           A PP  +I+K  P  +   PTG
Sbjct: 231 ASPPTVNIKKESPQMQSYRPTG 252


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 627  PLXQHPKIPPXSE 665
            P   HP IPP SE
Sbjct: 1371 PTEWHPPIPPTSE 1383


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +1

Query: 628 PXTSIQKSPPPQRWXNPTGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXP 783
           P  ++     P+   NP+ +    A PP   L     P P   P   PP  P
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFP 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,124
Number of Sequences: 336
Number of extensions: 1287
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)