Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_D02
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.36
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.36
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 5.8
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 29 5.8
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 29 5.8
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 29 5.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/101 (26%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Frame = +1
Query: 574 RPXPVKRXRCWRXP*APPPXTS--------IQKSPPPQRWXNPTGLXRXXAXPPGXSLVX 729
RP P W P PPP + + PPP R+ P PPG
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPG 345
Query: 730 -LSCPDPARLPXTCPPFXPXGKRGXXXXPPAXXFPIPXLXP 849
+ P P R P P P PP+ IP P
Sbjct: 346 GMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Frame = +1
Query: 613 P*APPPXTSIQKSPPPQRWXNPT-GLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXG 789
P PPP S+ PPP PT G+ PP + P P P P P G
Sbjct: 261 PPVPPPPPSVTPMPPPM---PPTPGMTPRPPPPPSSGMWP---PPPPPPPGRTP--GPPG 312
Query: 790 KRGXXXXPPAXXFPIPXLXPSXP 858
G PP F P + P
Sbjct: 313 MPGMPPPPPPSRFGPPGMGGMPP 335
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/101 (26%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Frame = +1
Query: 574 RPXPVKRXRCWRXP*APPPXTS--------IQKSPPPQRWXNPTGLXRXXAXPPGXSLVX 729
RP P W P PPP + + PPP R+ P PPG
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPG 355
Query: 730 -LSCPDPARLPXTCPPFXPXGKRGXXXXPPAXXFPIPXLXP 849
+ P P R P P P PP+ IP P
Sbjct: 356 GMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Frame = +1
Query: 613 P*APPPXTSIQKSPPPQRWXNPT-GLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXG 789
P PPP S+ PPP PT G+ PP + P P P P P G
Sbjct: 271 PPVPPPPPSVTPMPPPM---PPTPGMTPRPPPPPSSGMWP---PPPPPPPGRTP--GPPG 322
Query: 790 KRGXXXXPPAXXFPIPXLXPSXP 858
G PP F P + P
Sbjct: 323 MPGMPPPPPPSRFGPPGMGGMPP 345
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.5
Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Frame = +1
Query: 625 PPXTSIQKSPPPQRWXNP-TGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXG---- 789
PP T PPP P TG P G + P P P CPP P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Query: 790 -KRGXXXXPPAXXF-PIPXLXPSXPXXGRVP 876
K G PP F P+ + P +VP
Sbjct: 780 FKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.5
Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Frame = +1
Query: 625 PPXTSIQKSPPPQRWXNP-TGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXG---- 789
PP T PPP P TG P G + P P P CPP P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Query: 790 -KRGXXXXPPAXXF-PIPXLXPSXPXXGRVP 876
K G PP F P+ + P +VP
Sbjct: 780 FKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.5
Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Frame = +1
Query: 625 PPXTSIQKSPPPQRWXNP-TGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXG---- 789
PP T PPP P TG P G + P P P CPP P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Query: 790 -KRGXXXXPPAXXF-PIPXLXPSXPXXGRVP 876
K G PP F P+ + P +VP
Sbjct: 363 FKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 393
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/83 (30%), Positives = 28/83 (33%)
Frame = +1
Query: 619 APPPXTSIQKSPPPQRWXNPTGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXGKRG 798
+PPP + SPPP R +P PP P P R PP P G
Sbjct: 254 SPPPPPA-AGSPPPPRTGSPPPPPTGSPPPPPAG----GSPPPPRAGSPPPPPPPRGS-- 306
Query: 799 XXXXPPAXXFPIPXLXPSXPXXG 867
PP P P S P G
Sbjct: 307 ----PPTGSLPPPQAGGSPPPAG 325
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/83 (30%), Positives = 28/83 (33%)
Frame = +1
Query: 619 APPPXTSIQKSPPPQRWXNPTGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXGKRG 798
+PPP + SPPP R +P PP P P R PP P G
Sbjct: 275 SPPPPPA-AGSPPPPRTGSPPPPPTGSPPPPPAG----GSPPPPRAGSPPPPPPPRGS-- 327
Query: 799 XXXXPPAXXFPIPXLXPSXPXXG 867
PP P P S P G
Sbjct: 328 ----PPTGSLPPPQAGGSPPPAG 346
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/83 (30%), Positives = 28/83 (33%)
Frame = +1
Query: 619 APPPXTSIQKSPPPQRWXNPTGLXRXXAXPPGXSLVXLSCPDPARLPXTCPPFXPXGKRG 798
+PPP + SPPP R +P PP P P R PP P G
Sbjct: 260 SPPPPPA-AGSPPPPRTGSPPPPPTGSPPPPPAG----GSPPPPRAGSPPPPPPPRGS-- 312
Query: 799 XXXXPPAXXFPIPXLXPSXPXXG 867
PP P P S P G
Sbjct: 313 ----PPTGSLPPPQAGGSPPPAG 331
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Frame = +1
Query: 625 PPXTSIQKSPPPQRWXNPTGLXR----XXAXPPGXSLVXLSCPDPARLPXTCPPFXPXGK 792
PP T PPP R NP+ + + PP L ++ P P PP P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPPAL 525
Query: 793 RGXXXXPP 816
PP
Sbjct: 526 EQEISGPP 533
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 619 APPPXTSIQKSPPPQRWXNP-TGLXRXXAXPP 711
APPP S+ + PPP P T L A PP
Sbjct: 580 APPPVASVMRMPPPVTPPKPCTPLTSKKAPPP 611
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 619 APPPXTSIQKSPPPQRWXNP-TGLXRXXAXPP 711
APPP S+ + PPP P T L A PP
Sbjct: 597 APPPVASVMRMPPPVTPPKPCTPLTSKKAPPP 628
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 619 APPPXTSIQKSPPPQRWXNP-TGLXRXXAXPP 711
APPP S+ + PPP P T L A PP
Sbjct: 709 APPPVASVMRMPPPVTPPKPCTPLTSKKAPPP 740
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,809,997
Number of Sequences: 27780
Number of extensions: 142466
Number of successful extensions: 421
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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