Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_D01
(923 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 32 0.099
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 1.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 4.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 4.9
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo... 26 6.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 6.5
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 6.5
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 26 8.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 8.6
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 32.3 bits (70), Expect = 0.099
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -3
Query: 324 IPIAVSD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNV 154
IP+A++D E+V+ DD + ++ + N R+ G+S +EPR R SG+ VNV
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE-VNV 295
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 521 KSSENVSWKLIPLWENNRVYFKIYSVRR--HQYLKLGTGTDGENDHSVYGD 667
K ++ +K IPL++NN KI +V R + + +GT +G N S D
Sbjct: 249 KECVDIFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNGANSSSTRQD 299
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 170 PLRPERKRGSSMLSPLPI 223
PL+P+R RG L PLP+
Sbjct: 144 PLKPKRGRGRPRLHPLPV 161
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 407 VLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSSENV 538
+LS++ +I+N + +K G A+D D++ GD +SSE++
Sbjct: 755 ILSDAQFRILNNLASTMLKDGKASDDDDN----GDWRPESSESL 794
>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
Csl4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 181
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 694 LVSVRVSAI----ISINAMVVFTIRTRSKFQVLVPTNTVDLEVNPVVLPERNQLPADVLA 527
+V RVS I ++N VV + T+ +FQ ++ + V + + P D++
Sbjct: 60 IVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVR 119
Query: 526 ALVVGI 509
ALV+ +
Sbjct: 120 ALVISL 125
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 359 RVRKSSNTTSLXQFRQVLSES---NVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSS 529
+ R S SL + SES N+ +N A +D DN+++ + ++
Sbjct: 42 QTRSQSKKPSLSSSAEPPSESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDD 101
Query: 530 ENVSWKLIPLWENNR 574
+ +W+ + L N +
Sbjct: 102 DFDTWEQVDLSPNKQ 116
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 369 NRQTLLPXFSLDRCYPRATSRSST 440
NR LP +L+ C+P+ T SST
Sbjct: 167 NRLNHLPVEALESCFPQTTLESST 190
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 241 LILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 378
+IL LEK + +++ VNN I +R++ A +I +G+ IVK
Sbjct: 45 VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 411 YPRATSRSSTRETILPSNSVLRQTQIT-TESHTAMPTTRAARTSAGS 548
YP + +R+ T E ++P+ + +T+I+ +E +T+ T A T++G+
Sbjct: 355 YPASGTRTGTVEVVIPTAGTVTETEISGSELYTS--TFPANGTTSGT 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,121
Number of Sequences: 5004
Number of extensions: 59338
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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