Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D01
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.73 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 192 EARRCYHHCRLQHGCFSDSAARETIEWKHHRGYRQQSHQRRQ 317
           E  + +HH +  H     +A ++     HHR Y+QQ  Q+++
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQD-----HHRPYQQQQQQQQR 172



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 255  EQQNQRNSRVVIGSGDSIDE 196
            +QQ Q++   VIG  DS+++
Sbjct: 1579 QQQQQQSGEPVIGMEDSVEQ 1598



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +3

Query: 165 SVRSDQSGNEARRCYHHCRLQHGCFSDSAARETIEWKHHRGYRQQSHQRRQ 317
           SV  DQS    ++ +HH        + +  ++  + +  +  +QQ  Q++Q
Sbjct: 801 SVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQ 851


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,679
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)