Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C23
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07010.1 68416.m00832 pectate lyase family protein similar to...    30   1.8  
At3g55560.1 68416.m06169 DNA-binding protein-related contains Pf...    29   3.1  
At5g49990.1 68418.m06190 xanthine/uracil permease family protein...    29   5.4  

>At3g07010.1 68416.m00832 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa]
          Length = 416

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 197 SGSLITTESAFSTTLTGVLSXGHSPAEXRTKIMKNXILYDH 75
           S + IT  + F T    V+  GHS +  R K+M+  I Y+H
Sbjct: 246 SSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNH 286


>At3g55560.1 68416.m06169 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 310

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 224 GNGXEPIDXRPYIVNPPKDYXPNGNGYETIDXGAYYVGPSPRA 352
           GN       +P + N P ++ PNG  ++      Y+ GP PRA
Sbjct: 266 GNNGNEGSMQPPMYNMPPNFIPNG--HQMAQHDVYWGGPPPRA 306


>At5g49990.1 68418.m06190 xanthine/uracil permease family protein
           similar to permease 1 [Zea mays] GI:7844006; contains
           Pfam profile: PF00860 Xanthine/uracil permeases family
          Length = 528

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 310 SFVPVPIRXVVFGRINDVRAVVNRFXXV 227
           +FVPV I  ++ GR NDV   V RF  +
Sbjct: 102 TFVPVTISIMLSGRFNDVADPVERFKRI 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,252,443
Number of Sequences: 28952
Number of extensions: 209912
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)