Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C22
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   4.8  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   4.8  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   6.4  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 89  HELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDE 193
           HE+R   L R  +L   G  L SS    R+T K+E
Sbjct: 102 HEVRVSSLARVQTLETTGSFLNSSNSEIRETIKNE 136


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = -2

Query: 228 IRSPFEPVTVRVSSLNVSRLALVLDPRHNPKFLNENFLRSPCFLSSCNETASRETFGLSR 49
           IRS  E + V     NV   +L+L P  N ++L EN+   P  L+ CNE   ++ +G  R
Sbjct: 95  IRSYAERI-VNNEDKNVFLDSLLLSP--NYEYLEENYGTIPVPLAYCNE---KDRYGSQR 148

Query: 48  TNAXNLK 28
                LK
Sbjct: 149 RETVPLK 155


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 291 QFLPRLAPLAXTQ--YPVVDSEQIRSPFEPVTVRVSSLNVSRLALVLDPR 148
           +FL   A  A ++  + +V     R+P E   VR+S++N+   A+ LD R
Sbjct: 691 EFLAACATAASSEQHFTLVSETSKRAPSEIAVVRISNVNLFLNAMGLDAR 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,476
Number of Sequences: 5004
Number of extensions: 40417
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)