Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C22
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-6|CAE17977.2|  734|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81131-5|CAB03422.2|  608|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AY241925-2|AAO85273.1|  734|Caenorhabditis elegans chondroitin d...    29   4.6  
AY241925-1|AAO85274.1|  736|Caenorhabditis elegans chondroitin d...    29   4.6  
AB088398-1|BAC76781.1|  715|Caenorhabditis elegans chondroitin s...    29   4.6  
AB088397-1|BAC76780.1|  726|Caenorhabditis elegans chondroitin s...    29   4.6  

>Z81131-6|CAE17977.2|  734|Caenorhabditis elegans Hypothetical
           protein T24D1.1b protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 71  RDAVSLHELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDETRTVTGSKGLRICSEST 244
           +DA++LH ++   + RK  LRN  + L    RA R     E  T      +R+    T
Sbjct: 292 KDAITLHPIKDPAVMRKVHLRNREIKL-REARAKRSLLSSELSTAKAQTLVRMTPNRT 348


>Z81131-5|CAB03422.2|  608|Caenorhabditis elegans Hypothetical
           protein T24D1.1a protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 71  RDAVSLHELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDETRTVTGSKGLRICSEST 244
           +DA++LH ++   + RK  LRN  + L    RA R     E  T      +R+    T
Sbjct: 166 KDAITLHPIKDPAVMRKVHLRNREIKL-REARAKRSLLSSELSTAKAQTLVRMTPNRT 222


>AY241925-2|AAO85273.1|  734|Caenorhabditis elegans chondroitin
           disaccharide polymerase protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 71  RDAVSLHELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDETRTVTGSKGLRICSEST 244
           +DA++LH ++   + RK  LRN  + L    RA R     E  T      +R+    T
Sbjct: 292 KDAITLHPIKDPAVMRKVHLRNREIKL-REARAKRSLLSSELSTAKAQTLVRMTPNRT 348


>AY241925-1|AAO85274.1|  736|Caenorhabditis elegans chondroitin
           disaccharide polymerase protein.
          Length = 736

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 71  RDAVSLHELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDETRTVTGSKGLRICSEST 244
           +DA++LH ++   + RK  LRN  + L    RA R     E  T      +R+    T
Sbjct: 294 KDAITLHPIKDPAVMRKVHLRNREIKL-REARAKRSLLSSELSTAKAQTLVRMTPNRT 350


>AB088398-1|BAC76781.1|  715|Caenorhabditis elegans chondroitin
           synthase-S protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 71  RDAVSLHELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDETRTVTGSKGLRICSEST 244
           +DA++LH ++   + RK  LRN  + L    RA R     E  T      +R+    T
Sbjct: 273 KDAITLHPIKDPAVMRKVHLRNREIKL-REARAKRSLLSSELSTAKAQTLVRMTPNRT 329


>AB088397-1|BAC76780.1|  726|Caenorhabditis elegans chondroitin
           synthase protein.
          Length = 726

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 71  RDAVSLHELRKHGLRRKFSLRNLGLCLGSSTRASRDTFKDETRTVTGSKGLRICSEST 244
           +DA++LH ++   + RK  LRN  + L    RA R     E  T      +R+    T
Sbjct: 284 KDAITLHPIKDPAVMRKVHLRNREIKL-REARAKRSLLSSELSTAKAQTLVRMTPNRT 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,663
Number of Sequences: 27780
Number of extensions: 226722
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)