Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C21
         (1012 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    29   1.0  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   9.7  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 424 SRAWWRWQHKYVQXKKVGMAPFYQLLVGSMVFFYAIN-YGRIXHHKXY 564
           S +++ W +K    K    AP   L+   +VF YA   Y  I HH+ +
Sbjct: 49  SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSYASEYYYHIRHHEEH 96


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 TMENLILPFSPVEAERNRFVVRSPQQDSVCRGRSFQSSLVEMA 446
           T ++++  F+ ++     F ++SP++D VC     Q   +E A
Sbjct: 323 TKQDILSYFAFIKGNIEVFFLKSPKKDKVCNMAYIQFDSIEQA 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,881
Number of Sequences: 5004
Number of extensions: 46535
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)