Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C21
         (1012 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0385 + 17167174-17167440,17173321-17173962                       30   2.6  
02_05_0516 + 29694631-29695182                                         30   2.6  
02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030           29   7.8  

>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 447 LPSPPGSTESSGHGRRSLAAATEPRTD 367
           LP  P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>02_05_0516 + 29694631-29695182
          Length = 183

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 376 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQXKKVGMA 483
           W  RRSK+ PS  A AG   + WW W   ++  KK G A
Sbjct: 67  WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105


>02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030
          Length = 469

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 486 WSHANLLXLYVLMLPSPPGSTESSGHGRRSLAAATEPRTDFVQLQLG*MGV 334
           W     +  YV+ +     +  S GH +  + AA +P  D  ++ LG +GV
Sbjct: 194 WGKGGAVHEYVVGMRIVTPAPASEGHAKVRVLAAGDPELDAAKVSLGVLGV 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,443,202
Number of Sequences: 37544
Number of extensions: 340687
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2975543960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)