Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C19
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0163 - 6056959-6058989                                           30   2.1  
04_01_0080 - 889548-889892                                             28   8.4  

>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 93  NAXFSCLVVCCGSCRFRHRATFSXEQMPE------RCTFSSVLPSNGRAG 224
           NA FS ++ C  +C    +A    E+MP+        T+S+V+ + GRAG
Sbjct: 184 NATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAG 233


>04_01_0080 - 889548-889892
          Length = 114

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = -1

Query: 373 IDLHNFINIQIPVHICQFSC 314
           +D+H+++N+ + + +C+F C
Sbjct: 84  VDIHDYLNLALHMQLCRFGC 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010,106
Number of Sequences: 37544
Number of extensions: 258427
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)