Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C17
         (1081 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.76 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   4.0  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   7.1  
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           22   9.3  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   9.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   9.3  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 455 GLWAFLS--KFFRVFFQGNQFLKFGPQGSPFG 366
           G+W +LS   FF+ FF     +KFG +  P G
Sbjct: 408 GMWMWLSCSSFFQQFFHCYCPIKFGRKADPNG 439


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 639 TVQINSSTWCATRXXTGLLGSSRKAALIASSKRLR 743
           T++INS T C T    G+    +K   I S+ RLR
Sbjct: 146 TMEINSDTMCVTFSNLGIQCVKKKD--IESALRLR 178


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 441 KSPKAQKPGGPLPNRRVFSKXSXWWNQEVAPNLKKGWY 554
           K  + QK G     R +      WWN+      K+G Y
Sbjct: 77  KCSETQKNGSKKIMRHLIDHKRDWWNELEEKYDKEGEY 114


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 728 QQKTENLRTCFXXWKQSFPTVES 796
           +Q+T++L   F   ++S PT+ S
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS 28


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 399 KLVSLEKNPEKFGKKSPKAQKPGG 470
           +++ L KNP+     + K  KPGG
Sbjct: 22  EIIILRKNPQDDILLTKKKSKPGG 45


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 728 QQKTENLRTCFXXWKQSFPTVES 796
           +Q+T++L   F   ++S PT+ S
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,744
Number of Sequences: 336
Number of extensions: 4913
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 31032197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)