Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C17
         (1081 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50130.1 68416.m05480 expressed protein ; expression supporte...    25   2.8  
At5g67020.1 68418.m08449 expressed protein                             28   9.3  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    28   9.3  

>At3g50130.1 68416.m05480 expressed protein ; expression supported
           by MPSS
          Length = 564

 Score = 25.4 bits (53), Expect(2) = 2.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 576 GPCVPWLLGNXXCETTSMMPKTVQINSSTW 665
           GP +PW        T    P T+Q +  TW
Sbjct: 62  GPILPWRYSVKRKRTNRPQPSTIQKDMFTW 91



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 432 FGKKSPKAQKPGGPLPNRRVFSKXSXW 512
           F KKS     P  PLP  R F     W
Sbjct: 41  FKKKSKSLPPPPPPLPPARPFGPILPW 67


>At5g67020.1 68418.m08449 expressed protein
          Length = 394

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 425 RVFFQGNQFLKFGPQGSPFGRAKFFPKRVTAKLXAFKLSRGTFCSFQGHWFPLG 264
           R+F  G+   +F  + S F  ++FFP+ +T +    + S G+  +F      LG
Sbjct: 185 RIFCCGSDLSEFFERESAFRSSEFFPRILTKQRSVSEKSAGSSSNFSRRSLDLG 238


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 486 FGSEGGHPVFGPLGFSF-QIFPGFFPRKPIFKIRTPRF 376
           FG  GG P FGP G  F    PGF P  P F    P F
Sbjct: 17  FGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGF 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,677,769
Number of Sequences: 28952
Number of extensions: 451015
Number of successful extensions: 980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2685929392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)