BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_C17 (1081 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g50130.1 68416.m05480 expressed protein ; expression supporte... 25 2.8 At5g67020.1 68418.m08449 expressed protein 28 9.3 At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 28 9.3 >At3g50130.1 68416.m05480 expressed protein ; expression supported by MPSS Length = 564 Score = 25.4 bits (53), Expect(2) = 2.8 Identities = 10/30 (33%), Positives = 13/30 (43%) Frame = +3 Query: 576 GPCVPWLLGNXXCETTSMMPKTVQINSSTW 665 GP +PW T P T+Q + TW Sbjct: 62 GPILPWRYSVKRKRTNRPQPSTIQKDMFTW 91 Score = 23.0 bits (47), Expect(2) = 2.8 Identities = 11/27 (40%), Positives = 11/27 (40%) Frame = +3 Query: 432 FGKKSPKAQKPGGPLPNRRVFSKXSXW 512 F KKS P PLP R F W Sbjct: 41 FKKKSKSLPPPPPPLPPARPFGPILPW 67 >At5g67020.1 68418.m08449 expressed protein Length = 394 Score = 28.3 bits (60), Expect = 9.3 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -3 Query: 425 RVFFQGNQFLKFGPQGSPFGRAKFFPKRVTAKLXAFKLSRGTFCSFQGHWFPLG 264 R+F G+ +F + S F ++FFP+ +T + + S G+ +F LG Sbjct: 185 RIFCCGSDLSEFFERESAFRSSEFFPRILTKQRSVSEKSAGSSSNFSRRSLDLG 238 >At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to NtN2 [Medicago truncatula] GI:3776084; contains Pfam profile PF00917: MATH domain Length = 420 Score = 28.3 bits (60), Expect = 9.3 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -2 Query: 486 FGSEGGHPVFGPLGFSF-QIFPGFFPRKPIFKIRTPRF 376 FG GG P FGP G F PGF P P F P F Sbjct: 17 FGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGF 54 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,677,769 Number of Sequences: 28952 Number of extensions: 451015 Number of successful extensions: 980 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 949 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 980 length of database: 12,070,560 effective HSP length: 82 effective length of database: 9,696,496 effective search space used: 2685929392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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