Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C16
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-4|AAC48144.1|  479|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    29   5.8  
AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical...    28   7.7  

>U58735-4|AAC48144.1|  479|Caenorhabditis elegans Hypothetical
           protein F20B4.3 protein.
          Length = 479

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 562 VAEPTETTPTNVSREEMEFTTESXVRDVDVGLETAQKTMKSRSCXSDHVR 711
           ++ PT  +P N+ R    F+T + +RD DV   + Q T+        H R
Sbjct: 28  LSHPTRDSPINMYRTASPFSTVTRIRDSDVDRWSHQSTLADELAEEQHQR 77


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCXPERK 188
            TST A S C  S    WQ W T    C +C  +++
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQR 2838


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCXPERK 188
            TST A S C  S    WQ W T    C +C  +++
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQR 2838


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCXPERK 188
            TST A S C  S    WQ W T    C +C  +++
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQR 2838


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCXPERK 188
            TST A S C  S    WQ W T    C +C  +++
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQR 2838


>AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical
           protein F41E6.12 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 541 PEDSKRAVAEPTETTPTNVSREEMEFTTES 630
           P  +    AEPT TTP   S + ++F  ES
Sbjct: 70  PSTTTSTTAEPTTTTPLKSSTDSVDFDEES 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,565
Number of Sequences: 27780
Number of extensions: 351055
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)