Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C15
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.70 
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   6.6  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 108 PLQWFERNFPEVQQPQNSLKEI 43
           P QW ER+FP   Q  NS +EI
Sbjct: 246 PFQWIERSFPSQVQLANSRREI 267


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +3

Query: 288 PYPPARPCLRTSREIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQM 467
           PYP    C       AK   I +SC KYMN D V Q  +M      P G+       + +
Sbjct: 120 PYPEEYSC-------AKNLYICESCLKYMNSDHVLQRHKMKCSWSYPPGDEIYRDKNISI 172

Query: 468 EE 473
            E
Sbjct: 173 FE 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,070
Number of Sequences: 5004
Number of extensions: 57997
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)