Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C11
         (1016 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4JSC0 Cluster: Actin; n=13; Coelomata|Rep: Actin - Ano...    36   1.3  
UniRef50_Q4TDL5 Cluster: Chromosome undetermined SCAF6178, whole...    35   3.9  
UniRef50_Q42599 Cluster: NADH dehydrogenase [ubiquinone] iron-su...    33   8.9  

>UniRef50_Q4JSC0 Cluster: Actin; n=13; Coelomata|Rep: Actin -
           Anopheles gambiae (African malaria mosquito)
          Length = 376

 Score = 36.3 bits (80), Expect = 1.3
 Identities = 33/76 (43%), Positives = 39/76 (51%)
 Frame = +3

Query: 660 APPMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGP 839
           A P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G 
Sbjct: 129 AAPAVYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VSHTVPIYEGYALPHAILRMDLAG- 183

Query: 840 VXDLTDYLMKILTERG 887
             DLTDYLMKILTERG
Sbjct: 184 -RDLTDYLMKILTERG 198


>UniRef50_Q4TDL5 Cluster: Chromosome undetermined SCAF6178, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF6178,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 225

 Score = 34.7 bits (76), Expect = 3.9
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 336 PXNAPEGRGPFPNESRGKHXPRGKHQSSXRKARPFAQYPEPIGLTTQPRPTF 181
           P N P G GPFP   R +  PRG  +       P    P P+     P P F
Sbjct: 72  PYNRPHGHGPFPPAPRQQCGPRGTDRPPAPSPCPLLPLPPPV---PPPMPVF 120


>UniRef50_Q42599 Cluster: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 8, mitochondrial precursor; n=102;
           cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 8, mitochondrial precursor -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 222

 Score = 33.5 bits (73), Expect = 8.9
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 449 ISRVSNGVF*GFRNTXFXL-LVPSFFLTLKXPFLSPYPTXSTPLKGGXLSPTNRGENTCR 273
           IS+  N VF    NT F   +V    LTLK  F  P  T + P + G LSP  RGE+  R
Sbjct: 56  ISKDWNTVFERSINTLFLTEMVRGLSLTLKY-FFDPKVTINYPFEKGPLSPRFRGEHALR 114


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 925,283,219
Number of Sequences: 1657284
Number of extensions: 17894744
Number of successful extensions: 35257
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35216
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 96755564499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)