Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C11
         (1016 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    32   0.11 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   1.4  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          26   9.8  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   9.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 31/74 (41%), Positives = 36/74 (48%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P     IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 130 PAFYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VTHTVPIYEGYALPHAIMRLDLAG--R 183

Query: 846 DLTDYLMKILTERG 887
           DLTDYLMKIL ERG
Sbjct: 184 DLTDYLMKILMERG 197


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 348 PIPDPXNAPEG-RGPFPNESRGKHXPRGKHQSSXRKA--RPFAQYPEPI 211
           P+PD      G R  + + SR  H P G H    R+A  + +  +P PI
Sbjct: 31  PLPDANGMSNGYRDSYKSNSRMDHRPDGYHDGRGRRAYRKHYWGHPTPI 79


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 400 KXVFLNPQNTPFETREIGHLNWGLTWEE 483
           K + L PQ      R  G + WG TWE+
Sbjct: 144 KVIELYPQTCAVLIRGHGVIGWGATWEK 171


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 69  RPKLTSWNQNLKEFP 25
           RP  TSW +N +EFP
Sbjct: 129 RPHWTSWTENSEEFP 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,706,022
Number of Sequences: 5004
Number of extensions: 69551
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)