Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_C11
(1016 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1282 + 27528159-27529148,27529549-27529614 36 0.052
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 36 0.068
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 32 0.84
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 32 0.84
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 32 0.84
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 32 0.84
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 32 0.84
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 32 0.84
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 32 0.84
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 30 2.6
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 30 2.6
03_01_0421 + 3234978-3235020,3236114-3236319,3236383-3236400 29 7.9
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 35.9 bits (79), Expect = 0.052
Identities = 42/109 (38%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRD+ E + AL+F + MAT
Sbjct: 186 DLTDYLMKILTERGYSFTTTAER-EIVRDV-KEKLSYIALDF-DQEMAT 231
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 35.5 bits (78), Expect = 0.068
Identities = 32/74 (43%), Positives = 38/74 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTDYLMKILTERG
Sbjct: 186 DLTDYLMKILTERG 199
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 31.9 bits (69), Expect = 0.84
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDALMKILTERG 199
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 31.9 bits (69), Expect = 0.84
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDSLMKILTERG 199
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 31.9 bits (69), Expect = 0.84
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDSLMKILTERG 199
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 31.9 bits (69), Expect = 0.84
Identities = 30/74 (40%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYTLPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERG 887
DLTD+LMKILTERG
Sbjct: 185 DLTDHLMKILTERG 198
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 31.9 bits (69), Expect = 0.84
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDSLMKILTERG 199
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 31.9 bits (69), Expect = 0.84
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 633 SCFEKHFKHAPPMLRSPIQAGALACYAFXFVTTGYRAG--TPGNGXLQHR 776
SC + + AP + ++ C A V TG+ G T GNG QHR
Sbjct: 486 SCTDVNSARAPDRMLGEVRGSNSRCMASTLVRTGFVRGSMTQGNGCYQHR 535
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 31.9 bits (69), Expect = 0.84
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDSLMKILTERG 199
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 30.3 bits (65), Expect = 2.6
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +3
Query: 753 GNGXLQHRXPSTXGXAXPPXXSWVXEFGPVXDLTDYLMKILTERG 887
G+G + H P G A P + G DLTD LMKILTERG
Sbjct: 155 GDG-VTHTVPIYEGYALPHAILRLDLAG--RDLTDCLMKILTERG 196
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 30.3 bits (65), Expect = 2.6
Identities = 30/74 (40%), Positives = 36/74 (48%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGFTLPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 185 DLTDNLMKILTERG 198
>03_01_0421 + 3234978-3235020,3236114-3236319,3236383-3236400
Length = 88
Score = 28.7 bits (61), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 318 GRGPFPNESRGKHXPRGKHQSSXRKARPFAQYP 220
GR P R + PR ++ R+ RPF++YP
Sbjct: 45 GRAPRKYFGRNRLWPRPQNPPGARRLRPFSRYP 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,860,202
Number of Sequences: 37544
Number of extensions: 528593
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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