Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_C11
(1016 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 36 0.035
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.046
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.046
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.046
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 36 0.046
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 36 0.046
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 36 0.046
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 36 0.046
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 36 0.046
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 36 0.046
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 36 0.046
Z73970-3|CAA98242.2| 773|Caenorhabditis elegans Hypothetical pr... 29 5.3
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 28 9.3
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 36.3 bits (80), Expect = 0.035
Identities = 32/74 (43%), Positives = 38/74 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG T G+G + H P G A P + G
Sbjct: 130 PAMYVNIQA-VLSLYASGR-TTGIVLDT-GDG-VTHTVPIYEGYALPHAIQRLDLAG--R 183
Query: 846 DLTDYLMKILTERG 887
DLTDY+MKILTERG
Sbjct: 184 DLTDYMMKILTERG 197
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 87 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 140
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 141 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 186
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 117 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 170
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 171 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 216
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.046
Identities = 43/109 (39%), Positives = 52/109 (47%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGVVLDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184
Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
DLTDYLMKILTERG VRDI E + AL+F + MAT
Sbjct: 185 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLCYVALDFE-QEMAT 230
>Z73970-3|CAA98242.2| 773|Caenorhabditis elegans Hypothetical
protein C29A12.3a protein.
Length = 773
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 573 EGFPLQXPXXXQXKKE*TPDSCFEKHFKHAPPMLRSPI 686
EG + P + KKE TP S K F+ PP+ SP+
Sbjct: 656 EGSSKENPVKEEIKKE-TPKSVSPKKFEKKPPVKSSPV 692
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -3
Query: 339 DPXNAPEGRGP-FPNESRGKHXPRGKHQSSXRKARPFAQYPEPIGLTT 199
DP N G F N G P G HQ + P Y + LTT
Sbjct: 158 DPSNGMPGMAAEFVNNENGMPGPNGMHQQAMISGSPPFPYQNMMNLTT 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,804,166
Number of Sequences: 27780
Number of extensions: 408645
Number of successful extensions: 907
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2678332928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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