Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C09
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    32   0.100
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    28   1.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.5  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 32.3 bits (70), Expect = 0.100
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 227  LRDSHS--PARPFEGNTELNVHLSAFSRWKCAR*RNRQLPQQTTI 99
            +RD H+  P + F GN E N+ L+ FS WK +   NRQL +Q  +
Sbjct: 1167 IRDVHTLFPDKHFRGNIE-NI-LTDFSNWKLSAKLNRQLEEQQLV 1209


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 119 AVGYVTGHISNEKMPKGEHSV-LYCPQMAEPDCENPEVTISLTTWAHATYHS 271
           AV Y +  +S+EK P  EH V    P  +E    +    ISLT   H  +HS
Sbjct: 219 AVAYSSETVSDEKQPT-EHPVSANVPAKSEKAVCDENTKISLTNTEHYKFHS 269


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 323 RTHLPVFVFRTLGRSQ 276
           R H+PV+VF++LG SQ
Sbjct: 111 RKHVPVYVFKSLGDSQ 126


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 774 NPPPPPGXXGXXXFXGPXXPFPP 842
           NPPPPP   G      P  P PP
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,162
Number of Sequences: 5004
Number of extensions: 38825
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)