Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C08
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    34   0.047
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.4  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 612 NPVXXTAXHPPGXHPTXRXXXPTXXPLPXPXLHPXPPPXXXTLALTHPAXP 764
           +P+   A + P   P      PT  P P    HP PPP   +++ + P  P
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 564 APPXPXLSXVXXRWXANPVXXTAXHPPGXHPTXRXXXPTXXPLPXPXLHPXPP--PXXXT 737
           AP  P L     R    PV      PP   P+     P   P+  P   P PP  P    
Sbjct: 400 APALPPLGNAS-RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458

Query: 738 LALTHPAXP 764
           L    PA P
Sbjct: 459 LPAGMPAAP 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,347
Number of Sequences: 5004
Number of extensions: 18490
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)