Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_C08
(1253 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0066 - 536281-537196,537397-537452 36 0.088
11_04_0097 + 13448740-13450725 34 0.27
11_06_0610 - 25449085-25453284 33 0.36
03_01_0092 - 731069-731434,731569-733080 33 0.47
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 29 5.8
09_02_0082 - 4060018-4061604 29 7.7
04_03_0904 + 20717005-20718087 29 7.7
02_04_0413 + 22681957-22682035,22682253-22682788 29 7.7
01_06_0317 + 28425408-28426079,28426286-28426351 29 7.7
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 35.5 bits (78), Expect = 0.088
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 564 APPXPXLSXVXXRWXANPVXXTAXHPP-GXHPTXRXXXPTXXPLPXPXLHPXPPPXXXTL 740
+PP P ++ + P TA PP PT PT P+P + P PP T+
Sbjct: 214 SPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPPLPRATV 273
Query: 741 ALTHPAXPXXT 773
T P P T
Sbjct: 274 TPT-PTTPPST 283
>11_04_0097 + 13448740-13450725
Length = 661
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 665 PXXXHPRSLAXXXAAPXPXPTXXHARXHPPXXSSXHHALXXTRPXLDPPSAHGDP 829
P H R L A P P PT A P ++ R ++PPSA G P
Sbjct: 17 PLRPHLRLLCLATATPTPAPTPADADQATPTDAAAERRRRKRRLRVEPPSARGGP 71
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 33.5 bits (73), Expect = 0.36
Identities = 48/216 (22%), Positives = 56/216 (25%)
Frame = +2
Query: 605 GXXPCPXXCXXPPRXPSHXXPXXXHPRSLAXXXAAPXPXPTXXHARXHPPXXSSXHHALX 784
G P P PP S P H P P + PP S
Sbjct: 734 GHTPSPPKSS-PPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPS 792
Query: 785 XTRPXLDPPSAHGDPTXXXPXSXXXCXAXPTXXPXRGXSXXPXAXXRXXXXXTTPSXXXX 964
P PPS PT S P+ P G P + + P
Sbjct: 793 EAHPTSPPPSEKSPPTPAEESSPPTPEKSPS--PPSGHEGTPPSPVK--SSSPPPEAHVS 848
Query: 965 XPTTPKSXXPXAXXXXXXXRXALPAXXXREPPPXXISXXPXETSPXXPGXLTPXXXXXPA 1144
P KS P P PPP S P ET P LTP P
Sbjct: 849 SPPPEKSSSPP------------PEAHVSSPPPPEKSPPPPETK--SPPTLTPEISPPPE 894
Query: 1145 XRXSHXYRPXXAXXARXXPCRXXXXXXXPXXPPSPP 1252
+ + P + P + P SPP
Sbjct: 895 GKSPPSHTP----ESSSPPSKESEPPPTPTPKSSPP 926
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 33.1 bits (72), Expect = 0.47
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 704 AAPXPXPTXXHARXHPPXXSSXHHALXXT-RPXLDPP 811
AAP P P H + PP HH + T +P L PP
Sbjct: 246 AAPPPPPQHHHQQTPPPIQVQPHHIMPMTPQPQLQPP 282
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 630 AXHPPGXHPTXRXXXPTXXPLPXPXLHPXPPP 725
A P PT P P P P L P PPP
Sbjct: 85 AASTPPASPTANASPPPSLPPPPPPLRPPPPP 116
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 628 LXXTPPAPIPXXAXPXPPXXPCRXPXCT 711
L TPPAP P A P P P P T
Sbjct: 333 LVLTPPAPAPPVATPPTPATPVPTPPMT 360
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 639 PPGXHPTXRXXXPTXXPLPXPXLH-PXPPPXXXTLALTHPAXP 764
PP PT + P P P P H P PP T P P
Sbjct: 82 PPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPP 124
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 29.1 bits (62), Expect = 7.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 640 PPAPIPXXAXPXPPXXPCRXPXCT 711
PP P P PP PC P C+
Sbjct: 157 PPPPSPPCQHECPPTPPCEHPPCS 180
>01_06_0317 + 28425408-28426079,28426286-28426351
Length = 245
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 636 HPPGXHPTXRXXXPTXXPLPXPXLHPXPPPXXXTLA 743
H P P R P P P P P PPP ++A
Sbjct: 104 HLPQPKPQPRSPEPETPPAPAPLPPPPPPPPDTSVA 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,395,662
Number of Sequences: 37544
Number of extensions: 275629
Number of successful extensions: 1636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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