Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C08
         (1253 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    25   2.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   5.2  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    29   9.1  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 25.0 bits (52), Expect(2) = 2.2
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = -2

Query: 979 GGCGXXAXXGXGCGXVXXAXXGXWXXXRPTXRXARWGCXAXRGGXWXAXG 830
           GGCG     G GCG       G      P       GC    GG     G
Sbjct: 30  GGCGGGCGGGGGCG--GGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGG 77



 Score = 24.2 bits (50), Expect(2) = 2.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 724 GGGXGCSXGXGKGXXVGXXXRXVGWXPGG 638
           GGG GC  G G G   G      G   GG
Sbjct: 74  GGGGGCGGGGGCGGGGGGCGGGGGGCGGG 102


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
 Frame = +2

Query: 641 PRXPSHXXPXXXHPRSLAXXXAAPXPXPTXXHA--RXHPPXXSSXHHALXXTRPXLDPPS 814
           P+  +   P   +P+  A    AP P P   HA     PP  S   +A+    P   P  
Sbjct: 45  PQQTAPPPPPAPYPQQ-AVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYP 103

Query: 815 AHGDPTXXXPXSXXXCXAXPTXXPXRGXSXXP 910
            H  P    P +     A P   P +     P
Sbjct: 104 QHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPP 135


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +3

Query: 612 NPVXXTAXHPPGXHPTXRXXXPTXXPLPXPXLHPXPPPXXXTLALT 749
           +PV      PP   PT R   P   P+  P   P PPP      LT
Sbjct: 541 SPVREPTPPPPPREPTPREPTPEPEPVREPT--PPPPPPAKPRPLT 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,524
Number of Sequences: 27780
Number of extensions: 165666
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3485108972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)