Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C04
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   3.7  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   6.4  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 108 SLLVGLKRRSFQSC*RLSF*TAQRWSYIRL-RIKSWALLLYQTQRKAKARYTQYTLTLTI 284
           S++   + RS+ S   + F T + W +I L  +      +++      A +T+  LT T+
Sbjct: 420 SMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTATL 479

Query: 285 IELEKGVYEVRFKF*P 332
           +  +  + ++ F   P
Sbjct: 480 VREDDKIDDLNFLIGP 495


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 221 QKRPRLDPQSNIAPTLRCLKTEPLATLE 138
           +K PR DP  +    LR L TEP  +L+
Sbjct: 177 RKAPRQDPDESDVDVLRRLSTEPRYSLD 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,068
Number of Sequences: 5004
Number of extensions: 57273
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)