Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C04
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   8.9  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   8.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 832 GGKCQHFLRKPIHCLYTRGIKKLRII 909
           GGK Q F  + I CL +   K+++ +
Sbjct: 44  GGKEQDFRFEAIQCLQSSAFKEIKTL 69


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 82  LTPSSFSENVHKL 44
           LTP  F+E+VH++
Sbjct: 83  LTPDDFTEDVHEI 95


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 82  LTPSSFSENVHKL 44
           LTP  F+E+VH++
Sbjct: 83  LTPDDFTEDVHEI 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,163
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)